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Atropa belladonna
Camptotheca acuminata
Cannabis sativa
Catharanthus roseus
Digitalis purpurea
Dioscorea villosa
Echinacea purpurea
Ginkgo biloba
Hoodia gordonii
Hypericum perforatum
Panax quinquefolius
Rauvolfia serpentina
Rosmarinus officinalis
Valeriana officinalis
Tools
BLAST Search
Catharanthus Genome Browser
Camptotheca Genome Browser
Calotropis Genome Browser
Kratom Genome Browser
Genome Putative Function Search Tool
Downloads
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Medicinal Plants Genomics Resource BLAST Server
Select type of BLAST Search
blastn
blastx
tblastx
tblastn
blastp
Search a nucleotide database using a nucleotide query sequence.
Enter Query Sequence
Enter FASTA sequence:
or upload a file of FASTA sequence:
Choose Database to Search
Select the database you would like to search:
(A description of the databases that are available for each type of BLAST is
available
.)
Atropa belladonna sequence assembly (MSU v20111007)
Camptotheca acuminata sequence assembly (MSU v20111007)
Cannabis sativa sequence assembly (MSU v20111007)
Catharanthus roseus sequence assembly (MSU v20111007)
Digitalis purpurea sequence assembly (MSU v20111007)
Dioscorea villosa sequence assembly (MSU v20111007)
Echinacea purpurea sequence assembly (MSU v20111007)
Ginkgo biloba sequence assembly (MSU v20111007)
Hoodia gordonii sequence assembly (MSU v20111007)
Hypericum perforatum sequence assembly (MSU v20111007)
Panax quinquefolius sequence assembly (MSU v20111007)
Rauvolfia serpentina sequence assembly (MSU v20111007)
Rosmarinus officinalis sequence assembly (MSU v20111007)
Valeriana officinalis sequence assembly (MSU v201101007)
Medicinal plants GenBank ESTs
Arabidopsis thaliana cDNA (TAIR10)
Cannabis sativa mRNA (PlantGDB)
Catharanthus roseus mRNA (PlantGDB)
Ginkgo biloba mRNA (PlantGDB)
Panax quinquefolius mRNA (PlantGDB)
Submit BLAST Search
Search selected nucleotide database using blastn
Optional BLAST Parameters
Expect Threshold:
1e-200
1e-100
1e-50
1e-20
1e-10
1e-5
1e-4
1e-3
1e-2
1e-1
1
10
100
1000
Max Number of Alignments:
1
5
10
20
50
100
250
500
Max Number of Descriptions:
1
5
10
20
50
100
250
500
Word Length:
7
11
15
Word Length:
2
3
Filter:
none
dust
View Filter:
no
yes
Matrix:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Strand:
both
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